BS_TBWYAFSM
Spinal Cord Ependymoma
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- Spinal Cord Ependymoma
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- Spinal Cord Ependymoma
- overall_survival_months
- 20.2365308804205
- age_years
- 16.855
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- OXIDATIVE_PHOSPHORYLATION+0.536
- CHOLESTEROL_HOMEOSTASIS+0.373
- UNFOLDED_PROTEIN_RESPONSE+0.356
- PROTEIN_SECRETION+0.340
- DNA_REPAIR+0.320
- MYC_TARGETS_V1+0.311
- ADIPOGENESIS+0.307
- MYC_TARGETS_V2+0.301
- FATTY_ACID_METABOLISM+0.266
- GLYCOLYSIS+0.242
Top 10 suppressed
- ALLOGRAFT_REJECTION-0.451
- INTERFERON_GAMMA_RESPONSE-0.429
- IL6_JAK_STAT3_SIGNALING-0.414
- INTERFERON_ALPHA_RESPONSE-0.393
- INFLAMMATORY_RESPONSE-0.374
- KRAS_SIGNALING_UP-0.357
- COMPLEMENT-0.310
- HEDGEHOG_SIGNALING-0.191
- APICAL_JUNCTION-0.189
- IL2_STAT5_SIGNALING-0.146
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
7 twins match this tumor's tissue · 3 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | BS_TBWYAFSM | EPN | EPN Tumor | 0.948 |
| 2 | SJEPD030784_D1.RNA-Seq | EPN | Myxopapillary EPN | 0.889 |
| 3 | TCGA-CV-7437-01A-21R-2132-07 | — | — | 0.851 |
| 4 | SRR8942974 | — | — | 0.835 |
| 5 | SRR6013593 | — | cohortA1 | 0.832 |
| 6 | SJEPD030250_D1.RNA-Seq | EPN | Myxopapillary EPN | 0.828 |
| 7 | ULC1533T_S61 | — | cohortA2 | 0.818 |
| 8 | C3N-02153 | — | cohortA1 | 0.817 |
| 9 | MNG587 | — | — | 0.813 |
| 10 | SRR8518238 | — | C | 0.813 |