SJEPD030250_D1.RNA-Seq
EPN · Myxopapillary EPN
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- EPN
- cancer_type_detailed
- —
- subtype
- Myxopapillary EPN
- cancer_type
- EPN
- subtype
- Myxopapillary EPN
- age_years
- 10.27
- e1_e2
- E2
- umap1_2d
- -8.723560201
- umap2_2d
- 0.56266058
- umap1_3d
- 0.167647159
- umap2_3d
- 2.960197392
- umap3_3d
- 2.679243338
- dataset
- EPN-StJude
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- OXIDATIVE_PHOSPHORYLATION+0.600
- PROTEIN_SECRETION+0.400
- MYC_TARGETS_V1+0.390
- DNA_REPAIR+0.320
- ADIPOGENESIS+0.260
- E2F_TARGETS+0.260
- FATTY_ACID_METABOLISM+0.230
- UNFOLDED_PROTEIN_RESPONSE+0.230
- MTORC1_SIGNALING+0.220
- HEME_METABOLISM+0.210
Top 10 suppressed
- APICAL_SURFACE-0.390
- INFLAMMATORY_RESPONSE-0.380
- IL6_JAK_STAT3_SIGNALING-0.350
- INTERFERON_ALPHA_RESPONSE-0.300
- INTERFERON_GAMMA_RESPONSE-0.300
- ALLOGRAFT_REJECTION-0.250
- KRAS_SIGNALING_DN-0.210
- KRAS_SIGNALING_UP-0.200
- PI3K_AKT_MTOR_SIGNALING-0.180
- APICAL_JUNCTION-0.150
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
7 twins match this tumor's tissue · 3 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SJEPD030784_D1.RNA-Seq | EPN | Myxopapillary EPN | 0.892 |
| 2 | BS_KSKZ9J7J | Embryonal tumors | — | 0.841 |
| 3 | BS_TBWYAFSM | Spinal Cord Ependymoma | — | 0.828 |
| 4 | SRR23303753 | — | — | 0.825 |
| 5 | DRR168541 | — | — | 0.823 |
| 6 | BS_G23JJAZY | Supratentorial Ependymoma | — | 0.820 |
| 7 | SJEPD030833_D1.RNA-Seq | EPN | Posterior Fossa EPN | 0.818 |
| 8 | 4e2a5058-c190-49de-97f4-0ba7be7ebfe8 | — | — | 0.808 |
| 9 | MNG93 | — | — | 0.801 |
| 10 | SRR4195680 | — | — | 0.798 |