TCGA-77-8136-01A-11R-2247-07
— · cohortSQ1
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortSQ1
- subtype
- cohortSQ1
- age_years
- 74
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.730
- INTERFERON_GAMMA_RESPONSE+0.600
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.540
- E2F_TARGETS+0.500
- G2M_CHECKPOINT+0.460
- MITOTIC_SPINDLE+0.440
- ALLOGRAFT_REJECTION+0.420
- IL6_JAK_STAT3_SIGNALING+0.420
- INFLAMMATORY_RESPONSE+0.390
- PI3K_AKT_MTOR_SIGNALING+0.390
Top 10 suppressed
- OXIDATIVE_PHOSPHORYLATION-0.330
- BILE_ACID_METABOLISM-0.310
- ADIPOGENESIS-0.220
- FATTY_ACID_METABOLISM-0.200
- XENOBIOTIC_METABOLISM-0.110
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.100
- CHOLESTEROL_HOMEOSTASIS-0.090
- PANCREAS_BETA_CELLS-0.080
- ESTROGEN_RESPONSE_EARLY-0.070
- ANDROGEN_RESPONSE-0.060
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-FD-A3B4-01A-12R-A206-07 | — | — | 0.899 |
| 2 | TCGA-39-5030-01A-01R-1443-07 | — | cohortSQ1 | 0.887 |
| 3 | TCGA-ZF-AA5H-01A-11R-A39I-07 | — | — | 0.884 |
| 4 | TCGA-92-8064-01A-11R-2247-07 | — | cohortSQ2 | 0.882 |
| 5 | TCGA-FD-A3B3-01A-12R-A206-07 | — | — | 0.873 |
| 6 | SRR650191 | — | — | 0.873 |
| 7 | R409 | — | — | 0.871 |
| 8 | SRR934956 | — | — | 0.864 |
| 9 | TCGA-22-5489-01A-01R-1635-07 | — | cohortSQ1 | 0.861 |
| 10 | TCGA-4Z-AA86-01A-11R-A39I-07 | — | — | 0.859 |