SRR8518248
— · E
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- E
- subtype
- E
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V1+0.450
- OXIDATIVE_PHOSPHORYLATION+0.430
- MTORC1_SIGNALING+0.410
- MYC_TARGETS_V2+0.400
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.390
- FATTY_ACID_METABOLISM+0.330
- PANCREAS_BETA_CELLS+0.310
- GLYCOLYSIS+0.300
- E2F_TARGETS+0.290
- CHOLESTEROL_HOMEOSTASIS+0.280
Top 10 suppressed
- ANGIOGENESIS-0.440
- TGF_BETA_SIGNALING-0.350
- WNT_BETA_CATENIN_SIGNALING-0.340
- IL2_STAT5_SIGNALING-0.300
- TNFA_SIGNALING_VIA_NFKB-0.290
- UV_RESPONSE_DN-0.290
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.280
- MITOTIC_SPINDLE-0.270
- IL6_JAK_STAT3_SIGNALING-0.250
- HEDGEHOG_SIGNALING-0.210
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | 2d83a9e6-da2d-47e1-b2e7-4b07b108f7bd | — | — | 0.880 |
| 2 | TCGA-39-5036-01A-01R-1443-07 | — | cohortSQ2 | 0.878 |
| 3 | TCGA-EW-A1OY-01A-11R-A144-07 | — | B | 0.865 |
| 4 | TCGA-37-4133-01A-01R-1100-07 | — | cohortSQ1 | 0.862 |
| 5 | TCGA-AO-A0JD-01A-11R-A056-07 | — | C | 0.852 |
| 6 | SRR1516095 | — | — | 0.850 |
| 7 | TCGA-66-2766-01A-01R-0851-07 | — | cohortSQ2 | 0.844 |
| 8 | TCGA-22-5491-01A-01R-1635-07 | — | cohortSQ2 | 0.840 |
| 9 | TCGA-18-3412-01A-01R-0980-07 | — | cohortSQ2 | 0.838 |
| 10 | 3fca0833-b19b-47af-b75e-c9c45a99373b | — | — | 0.831 |