SRR12475171
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
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- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.770
- INTERFERON_GAMMA_RESPONSE+0.620
- ALLOGRAFT_REJECTION+0.500
- MYC_TARGETS_V2+0.400
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.360
- GLYCOLYSIS+0.300
- E2F_TARGETS+0.290
- INFLAMMATORY_RESPONSE+0.280
- COMPLEMENT+0.270
- IL6_JAK_STAT3_SIGNALING+0.260
Top 10 suppressed
- WNT_BETA_CATENIN_SIGNALING-0.390
- CHOLESTEROL_HOMEOSTASIS-0.370
- UV_RESPONSE_DN-0.340
- TGF_BETA_SIGNALING-0.300
- ANDROGEN_RESPONSE-0.290
- NOTCH_SIGNALING-0.220
- PANCREAS_BETA_CELLS-0.220
- HEDGEHOG_SIGNALING-0.210
- MYOGENESIS-0.210
- BILE_ACID_METABOLISM-0.180
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | c63f3f74-14fa-4a9e-9925-30b0f5da7dd9 | — | — | 0.896 |
| 2 | 695836ff-c54b-47bf-8a29-5224811afa7e | — | — | 0.835 |
| 3 | 77f39159-497c-47a0-bc8a-fb05dcd1826b | — | — | 0.829 |
| 4 | TCGA-F7-A61S-01A-11R-A28V-07 | — | — | 0.825 |
| 5 | TCGA-AR-A1AQ-01A-11R-A12P-07 | — | E | 0.821 |
| 6 | TCGA-T2-A6WX-01A-12R-A34R-07 | — | — | 0.820 |
| 7 | TCGA-CV-A6JZ-01A-11R-A31N-07 | — | — | 0.819 |
| 8 | TCGA-UF-A7JT-01A-11R-A34R-07 | — | — | 0.817 |
| 9 | MNG921 | — | — | 0.816 |
| 10 | TCGA-UF-A7JO-01A-11R-A34R-07 | — | — | 0.813 |