SRR8613704
— · A
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- A
- subtype
- A
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.460
- ALLOGRAFT_REJECTION+0.450
- UV_RESPONSE_DN+0.430
- TGF_BETA_SIGNALING+0.340
- ANGIOGENESIS+0.320
- KRAS_SIGNALING_UP+0.310
- IL6_JAK_STAT3_SIGNALING+0.300
- INFLAMMATORY_RESPONSE+0.300
- COMPLEMENT+0.270
- INTERFERON_GAMMA_RESPONSE+0.230
Top 10 suppressed
- MYC_TARGETS_V2-0.560
- ESTROGEN_RESPONSE_LATE-0.410
- OXIDATIVE_PHOSPHORYLATION-0.410
- ESTROGEN_RESPONSE_EARLY-0.380
- GLYCOLYSIS-0.350
- MYC_TARGETS_V1-0.350
- CHOLESTEROL_HOMEOSTASIS-0.340
- MTORC1_SIGNALING-0.330
- UV_RESPONSE_UP-0.330
- ADIPOGENESIS-0.300
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR8518405 | — | A | 0.871 |
| 2 | AUR-AE6X-TTP1-A-1-0-R-A741-41 | — | D | 0.864 |
| 3 | C3L-02957 | — | cohortMD2 | 0.850 |
| 4 | SRR4195664 | — | — | 0.848 |
| 5 | s0122308 | — | — | 0.844 |
| 6 | 023160e4-1d9a-499c-9bfa-1b3aacf284f2 | — | — | 0.841 |
| 7 | AUR-AG12-TTP1-A-1-0-R-A741-41 | — | A | 0.840 |
| 8 | ad478846-0a75-4081-ac09-37ee5415d9b4 | — | — | 0.840 |
| 9 | TCGA-CR-7382-01A-11R-2132-07 | — | — | 0.832 |
| 10 | 86db93b2-14b0-4094-bd69-222582df130c | — | — | 0.831 |