SRR12475140
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.570
- INFLAMMATORY_RESPONSE+0.520
- ALLOGRAFT_REJECTION+0.510
- ANGIOGENESIS+0.510
- INTERFERON_GAMMA_RESPONSE+0.480
- TNFA_SIGNALING_VIA_NFKB+0.470
- INTERFERON_ALPHA_RESPONSE+0.440
- IL6_JAK_STAT3_SIGNALING+0.390
- COMPLEMENT+0.320
- UV_RESPONSE_DN+0.310
Top 10 suppressed
- OXIDATIVE_PHOSPHORYLATION-0.540
- MYC_TARGETS_V2-0.450
- PEROXISOME-0.400
- BILE_ACID_METABOLISM-0.380
- FATTY_ACID_METABOLISM-0.370
- ADIPOGENESIS-0.350
- DNA_REPAIR-0.320
- GLYCOLYSIS-0.320
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.320
- MYC_TARGETS_V1-0.310
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
6 twins match this tumor's tissue · 4 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | 767fc312-2c66-43f7-b78e-bf79e03e3a0a | — | — | 0.903 |
| 2 | SRR6013514 | — | cohortMD2 | 0.893 |
| 3 | SRR23303766 | — | — | 0.887 |
| 4 | SRR1335446 | GTEX | — | 0.887 |
| 5 | SRR607445 | GTEX | — | 0.884 |
| 6 | SRR821602 | GTEX | — | 0.882 |
| 7 | c56e13bb-f1b0-4ee3-85c1-807c7c3bcef9 | — | — | 0.882 |
| 8 | ec054d40-e5b8-496a-8c99-5e7f88f2cf37 | — | — | 0.881 |
| 9 | MBCProject_1819_T2A_RNA | — | A | 0.876 |
| 10 | SRR818270 | GTEX | — | 0.876 |