20070115.Her2HRneg
— · E
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- E
- subtype
- E
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.470
- APICAL_JUNCTION+0.400
- APICAL_SURFACE+0.370
- MYOGENESIS+0.330
- WNT_BETA_CATENIN_SIGNALING+0.310
- COAGULATION+0.290
- NOTCH_SIGNALING+0.280
- UV_RESPONSE_DN+0.280
- CHOLESTEROL_HOMEOSTASIS+0.270
- PANCREAS_BETA_CELLS+0.200
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.570
- INTERFERON_GAMMA_RESPONSE-0.460
- ALLOGRAFT_REJECTION-0.310
- MYC_TARGETS_V2-0.280
- DNA_REPAIR-0.220
- INFLAMMATORY_RESPONSE-0.180
- OXIDATIVE_PHOSPHORYLATION-0.180
- IL2_STAT5_SIGNALING-0.140
- HEDGEHOG_SIGNALING-0.130
- COMPLEMENT-0.100
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-33-4547-01A-01R-1201-07 | — | cohortSQ1 | 0.767 |
| 2 | SRR8613758 | — | C | 0.764 |
| 3 | SRR8518427 | — | E | 0.760 |
| 4 | SRR8613779 | — | D | 0.731 |
| 5 | SRR9879274 | — | cohortSQ1 | 0.715 |
| 6 | SRR8518326 | — | E | 0.713 |
| 7 | TCGA-AO-A0J5-01A-11R-A034-07 | — | A | 0.704 |
| 8 | TCGA-BH-A0HY-01A-11R-A056-07 | — | C | 0.703 |
| 9 | SRR8613703 | — | D | 0.701 |
| 10 | TCGA-BL-A13J-01A-11R-A10U-07 | — | — | 0.698 |