SRR6013590
— · cohortA1
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortA1
- subtype
- cohortA1
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.550
- TNFA_SIGNALING_VIA_NFKB+0.550
- INFLAMMATORY_RESPONSE+0.470
- ANGIOGENESIS+0.430
- IL6_JAK_STAT3_SIGNALING+0.430
- INTERFERON_GAMMA_RESPONSE+0.430
- COAGULATION+0.420
- COMPLEMENT+0.420
- HYPOXIA+0.400
- INTERFERON_ALPHA_RESPONSE+0.400
Top 10 suppressed
- E2F_TARGETS-0.520
- G2M_CHECKPOINT-0.480
- SPERMATOGENESIS-0.300
- MYC_TARGETS_V1-0.270
- MITOTIC_SPINDLE-0.230
- MYC_TARGETS_V2-0.230
- WNT_BETA_CATENIN_SIGNALING-0.190
- DNA_REPAIR-0.160
- PANCREAS_BETA_CELLS-0.120
- OXIDATIVE_PHOSPHORYLATION-0.100
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
2 twins match this tumor's tissue · 8 come from a different tissue of origin ← cross-tissue dominant
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | BS_F8N6CFQE | low-grade glioma | — | 0.937 |
| 2 | BS_MF9X3PKH | low-grade glioma | — | 0.933 |
| 3 | BS_M4TTKPNR | pilocytic astrocytoma | — | 0.932 |
| 4 | BS_55JW3HFM | Ganglioglioma | — | 0.928 |
| 5 | BS_42Y3YANN | pilocytic astrocytoma | — | 0.926 |
| 6 | TCGA-73-4658-01A-01R-1755-07 | — | cohortA1 | 0.925 |
| 7 | TCGA-64-5815-01A-01R-1628-07 | — | cohortA1 | 0.924 |
| 8 | BS_77CDMEY4 | Ganglioglioma | — | 0.921 |
| 9 | BS_HC5M8JTC | low-grade glioma | — | 0.920 |
| 10 | BS_V89HGTET | pilocytic astrocytoma | — | 0.919 |