MDT-AP-3274
Med · Medulloblastoma
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- Med
- cancer_type_detailed
- —
- subtype
- Medulloblastoma
- cancer_type
- Med
- subtype
- Medulloblastoma
- age_years
- 1.1
- sex
- M
- new_clusters
- S3
- umap1_2d
- -2.919360093
- umap2_2d
- -7.701068764
- umap1_3d
- -2.984366164
- umap2_3d
- -3.321222186
- umap3_3d
- 7.903899261
- dataset
- Med-Taylor
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.470
- ALLOGRAFT_REJECTION+0.460
- INTERFERON_GAMMA_RESPONSE+0.460
- IL6_JAK_STAT3_SIGNALING+0.440
- INFLAMMATORY_RESPONSE+0.420
- UV_RESPONSE_DN+0.420
- COMPLEMENT+0.380
- KRAS_SIGNALING_UP+0.350
- PROTEIN_SECRETION+0.330
- TNFA_SIGNALING_VIA_NFKB+0.330
Top 10 suppressed
- E2F_TARGETS-0.670
- G2M_CHECKPOINT-0.570
- MYC_TARGETS_V2-0.570
- MYC_TARGETS_V1-0.510
- DNA_REPAIR-0.470
- UNFOLDED_PROTEIN_RESPONSE-0.270
- GLYCOLYSIS-0.240
- SPERMATOGENESIS-0.240
- MTORC1_SIGNALING-0.220
- MITOTIC_SPINDLE-0.160
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | BS_YVMEEBKC | pilocytic astrocytoma | — | 0.910 |
| 2 | MDT-AP-3282 | Med | Medulloblastoma | 0.895 |
| 3 | TCGA-AC-A2FB-01A-11R-A17B-07 | — | A | 0.894 |
| 4 | TCGA-49-6744-01A-11R-1858-07 | — | cohortA1 | 0.889 |
| 5 | TCGA-91-7771-01A-11R-2170-07 | — | cohortA2 | 0.884 |
| 6 | SRR17866835 | — | — | 0.882 |
| 7 | BS_C6SKJG3N | pilocytic astrocytoma | — | 0.880 |
| 8 | TCGA-A7-A0CG-01A-12R-A056-07 | — | A | 0.880 |
| 9 | TCGA-AC-A2FO-01A-11R-A180-07 | — | A | 0.880 |
| 10 | 2eaa09cd-8e3e-4de9-ab96-7a290d780a01 | — | — | 0.879 |