TCGA-60-2723-01A-01R-0851-07
— · cohortSQ2
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortSQ2
- subtype
- cohortSQ2
- age_years
- 74
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V1+0.620
- MTORC1_SIGNALING+0.610
- MYC_TARGETS_V2+0.540
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.530
- E2F_TARGETS+0.500
- CHOLESTEROL_HOMEOSTASIS+0.490
- UNFOLDED_PROTEIN_RESPONSE+0.490
- OXIDATIVE_PHOSPHORYLATION+0.480
- HYPOXIA+0.460
- G2M_CHECKPOINT+0.450
Top 10 suppressed
- BILE_ACID_METABOLISM-0.110
- KRAS_SIGNALING_DN-0.070
- APICAL_JUNCTION-0.030
- MYOGENESIS-0.010
- INTERFERON_ALPHA_RESPONSE+0.020
- WNT_BETA_CATENIN_SIGNALING+0.030
- TGF_BETA_SIGNALING+0.040
- SPERMATOGENESIS+0.050
- MITOTIC_SPINDLE+0.090
- APICAL_SURFACE+0.100
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-51-4079-01A-01R-1100-07 | — | cohortSQ2 | 0.944 |
| 2 | SRR11296801 | — | — | 0.916 |
| 3 | 61D1FD4D-F0FF-4D89-B26F-C1102685ED9D | — | — | 0.910 |
| 4 | BS_SHJA4MR0 | high-grade glioma | — | 0.904 |
| 5 | SRR1313157 | — | E | 0.902 |
| 6 | 46061E4B-5256-42AD-BA9A-FBCEBE92B09A | — | — | 0.900 |
| 7 | SRR12696796 | — | — | 0.896 |
| 8 | MDT-AP-0428 | Med | Medulloblastoma | 0.893 |
| 9 | EBE58DF8-7300-4D3E-9672-A4E7ADF46113 | — | — | 0.892 |
| 10 | 61496AD6-7265-4D58-87CC-4FEE9723106E | — | — | 0.892 |