TCGA-51-4079-01A-01R-1100-07
— · cohortSQ2
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortSQ2
- subtype
- cohortSQ2
- age_years
- 73
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V1+0.570
- MTORC1_SIGNALING+0.550
- G2M_CHECKPOINT+0.500
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.480
- TNFA_SIGNALING_VIA_NFKB+0.480
- E2F_TARGETS+0.470
- MYC_TARGETS_V2+0.460
- CHOLESTEROL_HOMEOSTASIS+0.430
- HYPOXIA+0.390
- UNFOLDED_PROTEIN_RESPONSE+0.390
Top 10 suppressed
- MYOGENESIS-0.030
- KRAS_SIGNALING_DN+0.030
- NOTCH_SIGNALING+0.050
- BILE_ACID_METABOLISM+0.070
- INTERFERON_ALPHA_RESPONSE+0.080
- SPERMATOGENESIS+0.080
- PANCREAS_BETA_CELLS+0.100
- MITOTIC_SPINDLE+0.110
- UV_RESPONSE_DN+0.150
- WNT_BETA_CATENIN_SIGNALING+0.160
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-60-2723-01A-01R-0851-07 | — | cohortSQ2 | 0.944 |
| 2 | R275 | — | — | 0.929 |
| 3 | SRR13311157 | — | — | 0.915 |
| 4 | SRR11296801 | — | — | 0.904 |
| 5 | TCGA-85-8666-01A-11R-2403-07 | — | cohortSQ1 | 0.903 |
| 6 | TCGA-ZF-AA56-01A-31R-A39I-07 | — | — | 0.901 |
| 7 | 61496AD6-7265-4D58-87CC-4FEE9723106E | — | — | 0.898 |
| 8 | 20060039.TNBC | — | C | 0.898 |
| 9 | 46061E4B-5256-42AD-BA9A-FBCEBE92B09A | — | — | 0.894 |
| 10 | AA762299-102B-4E35-B4A5-A94A122EF9DB | — | — | 0.892 |