beb52b13-584a-4227-abe8-9861c3388c14
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
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- cancer_type_detailed
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- subtype
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GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- OXIDATIVE_PHOSPHORYLATION+0.600
- E2F_TARGETS+0.500
- G2M_CHECKPOINT+0.500
- MYC_TARGETS_V2+0.500
- PROTEIN_SECRETION+0.500
- MYC_TARGETS_V1+0.400
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.400
- UNFOLDED_PROTEIN_RESPONSE+0.400
- ADIPOGENESIS+0.300
- FATTY_ACID_METABOLISM+0.300
Top 10 suppressed
- ALLOGRAFT_REJECTION-0.500
- INFLAMMATORY_RESPONSE-0.400
- INTERFERON_ALPHA_RESPONSE-0.400
- INTERFERON_GAMMA_RESPONSE-0.400
- KRAS_SIGNALING_UP-0.400
- IL6_JAK_STAT3_SIGNALING-0.300
- KRAS_SIGNALING_DN-0.300
- ANGIOGENESIS-0.200
- APICAL_JUNCTION-0.200
- COMPLEMENT-0.200
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-46-3768-01A-01R-0980-07 | — | cohortSQ2 | 0.900 |
| 2 | c6e243ee-b2d9-408e-ac05-ccbcffa805ab | — | — | 0.894 |
| 3 | TCGA-78-7220-01A-11R-2039-07 | — | cohortA4 | 0.890 |
| 4 | TCGA-21-1075-01A-01R-0692-07 | — | cohortSQ2 | 0.886 |
| 5 | SRR10900021 | — | — | 0.886 |
| 6 | ULC0410T_S45 | — | cohortA4 | 0.883 |
| 7 | MNG1063 | — | — | 0.881 |
| 8 | SRR5088859 | — | — | 0.881 |
| 9 | s0094236 | — | — | 0.879 |
| 10 | TCGA-DQ-7588-01A-11R-2081-07 | — | — | 0.875 |
Per-pathway drug coverage
For each elevated pathway in this tumor, the best-reversing drug across the catalog. Uncovered pathways = unmet need at pathway level for this one patient.
0 of 23 elevated pathways have at least one drug that meaningfully reverses them.
| Pathway (elevated) | tumor score | Best drug | reversal magnitude |
|---|---|---|---|
| OXIDATIVE_PHOSPHORYLATION | 0.600 | Remibrutinib | — uncovered |
| E2F_TARGETS | 0.500 | Inavolisib | — uncovered |
| G2M_CHECKPOINT | 0.500 | Inavolisib | — uncovered |
| MYC_TARGETS_V2 | 0.500 | Idelalisib | — uncovered |
| PROTEIN_SECRETION | 0.500 | Remibrutinib | — uncovered |
| MYC_TARGETS_V1 | 0.400 | Inavolisib | — uncovered |
| REACTIVE_OXYGEN_SPECIES_PATHWAY | 0.400 | Inavolisib | — uncovered |
| UNFOLDED_PROTEIN_RESPONSE | 0.400 | Idelalisib | — uncovered |
| ADIPOGENESIS | 0.300 | Inavolisib | — uncovered |
| FATTY_ACID_METABOLISM | 0.300 | Inavolisib | — uncovered |
| GLYCOLYSIS | 0.300 | Inavolisib | — uncovered |
| MITOTIC_SPINDLE | 0.300 | Inavolisib | — uncovered |
| MTORC1_SIGNALING | 0.300 | Inavolisib | — uncovered |
| PEROXISOME | 0.300 | Idelalisib | — uncovered |
| SPERMATOGENESIS | 0.300 | Inavolisib | — uncovered |
| ANDROGEN_RESPONSE | 0.200 | Inavolisib | — uncovered |
| DNA_REPAIR | 0.200 | Idelalisib | — uncovered |
| BILE_ACID_METABOLISM | 0.100 | Inavolisib | — uncovered |
| ESTROGEN_RESPONSE_LATE | 0.100 | Idelalisib | — uncovered |
| HEME_METABOLISM | 0.100 | Temsirolimus | — uncovered |