SRR10899994
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V1+0.500
- MYC_TARGETS_V2+0.500
- OXIDATIVE_PHOSPHORYLATION+0.500
- E2F_TARGETS+0.400
- G2M_CHECKPOINT+0.400
- DNA_REPAIR+0.300
- GLYCOLYSIS+0.200
- MTORC1_SIGNALING+0.200
- PROTEIN_SECRETION+0.200
- UNFOLDED_PROTEIN_RESPONSE+0.200
Top 10 suppressed
- IL6_JAK_STAT3_SIGNALING-0.500
- ALLOGRAFT_REJECTION-0.400
- COAGULATION-0.400
- COMPLEMENT-0.400
- INFLAMMATORY_RESPONSE-0.400
- INTERFERON_ALPHA_RESPONSE-0.400
- INTERFERON_GAMMA_RESPONSE-0.400
- TNFA_SIGNALING_VIA_NFKB-0.400
- ANGIOGENESIS-0.300
- APICAL_SURFACE-0.300
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR975602 | — | — | 0.942 |
| 2 | AUR-AFR3-TTM1-A-1-1-R-A743-41 | — | C | 0.932 |
| 3 | SRR10900570 | — | — | 0.927 |
| 4 | fea46737-a2b3-49d4-8358-d0737546b6da | — | — | 0.925 |
| 5 | MDT-AP-2388 | Med | Medulloblastoma | 0.923 |
| 6 | SAMN03290931 | — | — | 0.920 |
| 7 | 20120209.TNBC | — | E | 0.917 |
| 8 | TCGA-XF-A9ST-01A-11R-A42T-07 | — | — | 0.915 |
| 9 | MDT-AP-0756 | Med | Medulloblastoma | 0.914 |
| 10 | SRR12696795 | — | — | 0.914 |