SAMN03290931
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V1+0.500
- E2F_TARGETS+0.400
- MYC_TARGETS_V2+0.400
- UNFOLDED_PROTEIN_RESPONSE+0.400
- G2M_CHECKPOINT+0.300
- MTORC1_SIGNALING+0.300
- OXIDATIVE_PHOSPHORYLATION+0.300
- PROTEIN_SECRETION+0.300
- DNA_REPAIR+0.200
- GLYCOLYSIS+0.200
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.600
- INTERFERON_GAMMA_RESPONSE-0.500
- ALLOGRAFT_REJECTION-0.400
- COAGULATION-0.400
- COMPLEMENT-0.400
- IL6_JAK_STAT3_SIGNALING-0.400
- INFLAMMATORY_RESPONSE-0.400
- APICAL_SURFACE-0.300
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.300
- IL2_STAT5_SIGNALING-0.300
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR10899994 | — | — | 0.920 |
| 2 | AUR-AFR3-TTM1-A-1-1-R-A743-41 | — | C | 0.917 |
| 3 | SAMN03290927 | — | — | 0.912 |
| 4 | 004064de-0e10-491d-b3d8-bc628a8f70a8 | — | — | 0.909 |
| 5 | BS_JTMXAMB7 | medulloblastoma | — | 0.909 |
| 6 | 20120209.TNBC | — | E | 0.909 |
| 7 | 236350e9-8964-42ae-8880-d2f2281ff993 | — | — | 0.905 |
| 8 | BS_G23JJAZY | EPN | Supratentorial EPN | 0.901 |
| 9 | C3L-02649 | — | cohortMD1 | 0.900 |
| 10 | 4e2a5058-c190-49de-97f4-0ba7be7ebfe8 | — | — | 0.897 |