SAMN03290921
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- ALLOGRAFT_REJECTION+0.500
- INFLAMMATORY_RESPONSE+0.500
- APICAL_JUNCTION+0.400
- APICAL_SURFACE+0.400
- COAGULATION+0.400
- COMPLEMENT+0.400
- ESTROGEN_RESPONSE_EARLY+0.400
- ESTROGEN_RESPONSE_LATE+0.400
- IL6_JAK_STAT3_SIGNALING+0.400
- KRAS_SIGNALING_DN+0.400
Top 10 suppressed
- E2F_TARGETS-0.600
- G2M_CHECKPOINT-0.500
- PROTEIN_SECRETION-0.500
- MITOTIC_SPINDLE-0.400
- MYC_TARGETS_V1-0.400
- DNA_REPAIR-0.300
- UNFOLDED_PROTEIN_RESPONSE-0.300
- MTORC1_SIGNALING-0.200
- MYC_TARGETS_V2-0.200
- OXIDATIVE_PHOSPHORYLATION-0.200
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
4 twins match this tumor's tissue · 6 come from a different tissue of origin ← cross-tissue dominant
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SAMN03290902 | — | — | 0.946 |
| 2 | BS_4BWB0FA0 | low-grade glioma | — | 0.930 |
| 3 | BS_T55Y4Z0Y | low-grade glioma | — | 0.921 |
| 4 | BS_478TN841 | Ganglioglioma | — | 0.913 |
| 5 | BS_044XZ8ST | pilocytic astrocytoma | — | 0.909 |
| 6 | SRR10899982 | — | — | 0.908 |
| 7 | 7f51ff28-397d-466f-82b0-25e9c9182ea7 | — | — | 0.904 |
| 8 | BS_QTSXW7DA | pilocytic astrocytoma | — | 0.897 |
| 9 | SRR1431345 | GTEX | — | 0.894 |
| 10 | TCGA-AC-A3BB-01A-21R-A19W-07 | — | A | 0.894 |