SRR1444932
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- TNFA_SIGNALING_VIA_NFKB+0.589
- INFLAMMATORY_RESPONSE+0.546
- ANGIOGENESIS+0.517
- IL6_JAK_STAT3_SIGNALING+0.514
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.486
- COAGULATION+0.470
- IL2_STAT5_SIGNALING+0.361
- INTERFERON_GAMMA_RESPONSE+0.350
- KRAS_SIGNALING_UP+0.340
- APOPTOSIS+0.326
Top 10 suppressed
- OXIDATIVE_PHOSPHORYLATION-0.592
- MYC_TARGETS_V1-0.549
- DNA_REPAIR-0.522
- PROTEIN_SECRETION-0.445
- MYC_TARGETS_V2-0.417
- E2F_TARGETS-0.367
- UNFOLDED_PROTEIN_RESPONSE-0.295
- G2M_CHECKPOINT-0.288
- MITOTIC_SPINDLE-0.288
- MTORC1_SIGNALING-0.249
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1440082 | GTEX | — | 0.963 |
| 2 | SRR1384030 | GTEX | — | 0.963 |
| 3 | BS_ZTWGFWTX | pilocytic astrocytoma | — | 0.959 |
| 4 | SRR1408327 | GTEX | — | 0.958 |
| 5 | SRR1329885 | GTEX | — | 0.953 |
| 6 | SRR818469 | GTEX | — | 0.952 |
| 7 | SRR1478946 | GTEX | — | 0.950 |
| 8 | SRR1352706 | GTEX | — | 0.945 |
| 9 | sclcA055A_S52.txt | — | cohortMD2 | 0.944 |
| 10 | MDT-AP-1108 | Med | Medulloblastoma | 0.942 |