X1c87996e.59e7.495f.8c4e.f578c7e10ba8
— · cohortMD2
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortMD2
- subtype
- cohortMD2
- age_years
- 70
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.520
- ALLOGRAFT_REJECTION+0.510
- INTERFERON_GAMMA_RESPONSE+0.510
- IL6_JAK_STAT3_SIGNALING+0.340
- COMPLEMENT+0.310
- IL2_STAT5_SIGNALING+0.250
- INFLAMMATORY_RESPONSE+0.250
- APOPTOSIS+0.210
- APICAL_SURFACE+0.200
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.190
Top 10 suppressed
- MYC_TARGETS_V1-0.570
- E2F_TARGETS-0.540
- MYC_TARGETS_V2-0.500
- G2M_CHECKPOINT-0.470
- UNFOLDED_PROTEIN_RESPONSE-0.470
- GLYCOLYSIS-0.410
- ANGIOGENESIS-0.400
- OXIDATIVE_PHOSPHORYLATION-0.360
- MTORC1_SIGNALING-0.330
- DNA_REPAIR-0.310
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR13780265 | — | cohortMD2 | 0.874 |
| 2 | DRR168552 | — | — | 0.873 |
| 3 | SRR8518296 | — | A | 0.866 |
| 4 | TCGA-97-A4M6-01A-11R-A24X-07 | — | cohortA1 | 0.865 |
| 5 | SRR2778078 | — | — | 0.858 |
| 6 | 94b2af92-0cfc-40b2-977d-6bd0fa4440d9 | — | — | 0.854 |
| 7 | SRR8613709 | — | A | 0.853 |
| 8 | MDT-AP-1385 | Med | Medulloblastoma | 0.845 |
| 9 | ERR2208952 | — | — | 0.842 |
| 10 | 98e49cc4-1040-4291-b975-da3e8fc3ddfc | — | — | 0.841 |