SRR4296112
— · cohortA1
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortA1
- subtype
- cohortA1
- age_years
- 67
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- ALLOGRAFT_REJECTION+0.490
- OXIDATIVE_PHOSPHORYLATION+0.450
- INTERFERON_GAMMA_RESPONSE+0.370
- FATTY_ACID_METABOLISM+0.320
- PROTEIN_SECRETION+0.320
- INTERFERON_ALPHA_RESPONSE+0.310
- MYC_TARGETS_V1+0.290
- COMPLEMENT+0.280
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.270
- PEROXISOME+0.210
Top 10 suppressed
- TGF_BETA_SIGNALING-0.420
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.410
- ANGIOGENESIS-0.340
- TNFA_SIGNALING_VIA_NFKB-0.330
- HYPOXIA-0.220
- MYOGENESIS-0.220
- WNT_BETA_CATENIN_SIGNALING-0.220
- ESTROGEN_RESPONSE_EARLY-0.210
- COAGULATION-0.190
- NOTCH_SIGNALING-0.190
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | GSM6454734 | — | D | 0.844 |
| 2 | TCGA-K4-A5RJ-01A-11R-A28M-07 | — | — | 0.815 |
| 3 | SRR26320066 | — | — | 0.813 |
| 4 | MNG510 | — | — | 0.807 |
| 5 | TCGA-UF-A7JO-01A-11R-A34R-07 | — | — | 0.804 |
| 6 | MNG85 | — | — | 0.796 |
| 7 | SRR29022835 | — | C | 0.796 |
| 8 | TCGA-80-5611-01A-01R-1628-07 | — | cohortA4 | 0.793 |
| 9 | s0095134 | — | — | 0.784 |
| 10 | BS_W80TJC27 | EPN | Supratentorial EPN | 0.783 |