SJEPD032296_D1.RNA-Seq
EPN · Anaplastic EPN
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- EPN
- cancer_type_detailed
- —
- subtype
- Anaplastic EPN
- cancer_type
- EPN
- subtype
- Anaplastic EPN
- age_years
- 1.67
- e1_e2
- E2
- umap1_2d
- -6.079096031
- umap2_2d
- 1.411888363
- umap1_3d
- -0.596117697
- umap2_3d
- 3.748657282
- umap3_3d
- 0.074686979
- dataset
- EPN-StJude
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- IL6_JAK_STAT3_SIGNALING+0.520
- TNFA_SIGNALING_VIA_NFKB+0.500
- INFLAMMATORY_RESPONSE+0.490
- INTERFERON_GAMMA_RESPONSE+0.470
- UV_RESPONSE_DN+0.400
- IL2_STAT5_SIGNALING+0.380
- ALLOGRAFT_REJECTION+0.370
- COMPLEMENT+0.350
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.350
- TGF_BETA_SIGNALING+0.350
Top 10 suppressed
- PANCREAS_BETA_CELLS-0.480
- MYC_TARGETS_V2-0.350
- OXIDATIVE_PHOSPHORYLATION-0.350
- E2F_TARGETS-0.280
- DNA_REPAIR-0.230
- KRAS_SIGNALING_DN-0.200
- SPERMATOGENESIS-0.140
- G2M_CHECKPOINT-0.130
- MYC_TARGETS_V1-0.130
- ADIPOGENESIS-0.120
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MDT-AP-3280 | Med | Medulloblastoma | 0.901 |
| 2 | efe57fc7-7cf4-432b-86ff-9fd2d1a37b5e | — | — | 0.900 |
| 3 | SAMN03290930 | — | — | 0.893 |
| 4 | SRR934741 | — | — | 0.892 |
| 5 | TCGA-A8-A096-01A-11R-A00Z-07 | — | B | 0.890 |
| 6 | TCGA-63-A5MN-01A-22R-A27Q-07 | — | cohortA1 | 0.886 |
| 7 | 53933_S131 | — | cohortA1 | 0.882 |
| 8 | SJEPD031078_D1.RNA-Seq | EPN | Posterior Fossa EPN | 0.871 |
| 9 | TCGA-86-8075-01A-11R-2241-07 | — | cohortA1 | 0.869 |
| 10 | TCGA-50-5939-01A-11R-1628-07 | — | cohortA1 | 0.868 |