SRR604098
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V1+0.338
- DNA_REPAIR+0.335
- OXIDATIVE_PHOSPHORYLATION+0.295
- MYC_TARGETS_V2+0.263
- UNFOLDED_PROTEIN_RESPONSE+0.190
- PROTEIN_SECRETION+0.140
- PI3K_AKT_MTOR_SIGNALING+0.119
- PEROXISOME+0.056
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.024
- MITOTIC_SPINDLE+0.014
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.591
- ANGIOGENESIS-0.556
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.545
- INTERFERON_GAMMA_RESPONSE-0.515
- INFLAMMATORY_RESPONSE-0.511
- TNFA_SIGNALING_VIA_NFKB-0.507
- NOTCH_SIGNALING-0.492
- TGF_BETA_SIGNALING-0.470
- IL6_JAK_STAT3_SIGNALING-0.441
- COAGULATION-0.439
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1441141 | GTEX | — | 0.986 |
| 2 | SRR1458422 | GTEX | — | 0.986 |
| 3 | SRR1316874 | GTEX | — | 0.985 |
| 4 | SRR1429891 | GTEX | — | 0.983 |
| 5 | SRR1340420 | GTEX | — | 0.983 |
| 6 | SRR1407560 | GTEX | — | 0.982 |
| 7 | SRR818188 | GTEX | — | 0.980 |
| 8 | SRR1488751 | GTEX | — | 0.979 |
| 9 | SRR1410934 | GTEX | — | 0.977 |
| 10 | SRR1366057 | GTEX | — | 0.976 |