SRR8518399
— · E
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- E
- subtype
- E
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- E2F_TARGETS+0.510
- G2M_CHECKPOINT+0.450
- MYC_TARGETS_V2+0.420
- ANGIOGENESIS+0.400
- MITOTIC_SPINDLE+0.370
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.360
- MYC_TARGETS_V1+0.310
- WNT_BETA_CATENIN_SIGNALING+0.310
- APICAL_JUNCTION+0.240
- MTORC1_SIGNALING+0.240
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.480
- ALLOGRAFT_REJECTION-0.430
- INTERFERON_GAMMA_RESPONSE-0.420
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.350
- APOPTOSIS-0.310
- BILE_ACID_METABOLISM-0.310
- IL2_STAT5_SIGNALING-0.290
- COMPLEMENT-0.270
- FATTY_ACID_METABOLISM-0.270
- ADIPOGENESIS-0.260
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
7 twins match this tumor's tissue · 3 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-21-5783-01A-41R-2187-07 | — | cohortMD1 | 0.864 |
| 2 | TCGA-B6-A0I6-01A-11R-A034-07 | — | E | 0.864 |
| 3 | BS_TZ5D0A7R | Supratentorial Ependymoma | — | 0.859 |
| 4 | SJEPD001544_D1.RNA-Seq | EPN | Supratentorial EPN | 0.849 |
| 5 | TCGA-21-1081-01A-01R-0692-07 | — | cohortSQ1 | 0.840 |
| 6 | TCGA-BA-A8YP-01A-11R-A39I-07 | — | — | 0.838 |
| 7 | 20130126.TNBC | — | E | 0.832 |
| 8 | TCGA-22-4593-01A-21R-1820-07 | — | cohortSQ1 | 0.831 |
| 9 | BS_29X4ZX6Q | high-grade glioma | — | 0.830 |
| 10 | 32a88c36-6b9a-483f-ad00-bf899ae279ba | — | — | 0.830 |