SRR602704
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Female
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- OXIDATIVE_PHOSPHORYLATION+0.331
- HEDGEHOG_SIGNALING+0.299
- UV_RESPONSE_DN+0.189
- MYOGENESIS+0.158
- KRAS_SIGNALING_DN+0.156
- PANCREAS_BETA_CELLS+0.140
- SPERMATOGENESIS+0.128
- HEME_METABOLISM+0.095
- APICAL_JUNCTION+0.063
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.056
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.655
- INTERFERON_GAMMA_RESPONSE-0.616
- IL6_JAK_STAT3_SIGNALING-0.600
- ALLOGRAFT_REJECTION-0.499
- TNFA_SIGNALING_VIA_NFKB-0.482
- INFLAMMATORY_RESPONSE-0.470
- E2F_TARGETS-0.411
- COAGULATION-0.407
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.390
- IL2_STAT5_SIGNALING-0.369
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR602728 | GTEX | — | 0.981 |
| 2 | SRR1317344 | GTEX | — | 0.968 |
| 3 | SRR1390601 | GTEX | — | 0.962 |
| 4 | SRR1464373 | GTEX | — | 0.958 |
| 5 | SRR1389979 | GTEX | — | 0.957 |
| 6 | SRR600445 | GTEX | — | 0.957 |
| 7 | SRR1487194 | GTEX | — | 0.957 |
| 8 | SRR1459718 | GTEX | — | 0.954 |
| 9 | SRR613090 | GTEX | — | 0.952 |
| 10 | SRR1084842 | GTEX | — | 0.949 |