MDT-AP-2086
Med · Medulloblastoma
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- Med
- cancer_type_detailed
- —
- subtype
- Medulloblastoma
- cancer_type
- Med
- subtype
- Medulloblastoma
- age_years
- 0.5
- sex
- F
- new_clusters
- S3
- umap1_2d
- -1.086596052
- umap2_2d
- -7.613971415
- umap1_3d
- -3.526799494
- umap2_3d
- -3.21017203
- umap3_3d
- 6.101014765
- dataset
- Med-Taylor
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- TNFA_SIGNALING_VIA_NFKB+0.590
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.560
- IL6_JAK_STAT3_SIGNALING+0.510
- INFLAMMATORY_RESPONSE+0.500
- INTERFERON_GAMMA_RESPONSE+0.500
- ALLOGRAFT_REJECTION+0.490
- INTERFERON_ALPHA_RESPONSE+0.470
- APICAL_SURFACE+0.430
- E2F_TARGETS+0.410
- NOTCH_SIGNALING+0.410
Top 10 suppressed
- OXIDATIVE_PHOSPHORYLATION-0.200
- PEROXISOME-0.200
- SPERMATOGENESIS-0.200
- HEME_METABOLISM-0.140
- PROTEIN_SECRETION-0.130
- BILE_ACID_METABOLISM-0.080
- DNA_REPAIR-0.070
- KRAS_SIGNALING_DN-0.070
- ADIPOGENESIS-0.060
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.050
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MDT-AP-1404 | Med | Medulloblastoma | 0.921 |
| 2 | BS_J1AB8PMA | Med | Medulloblastoma | 0.919 |
| 3 | MDT-AP-2040 | Med | Medulloblastoma | 0.902 |
| 4 | F547C7BB-DBF1-4805-A0EA-D8BC36606032 | — | — | 0.901 |
| 5 | AUR-AFUI-TTP1-A-1-0-R-A743-41 | — | C | 0.895 |
| 6 | SRR10899973 | — | — | 0.890 |
| 7 | SRR10900575 | — | — | 0.889 |
| 8 | MDT-AP-0205 | Med | Medulloblastoma | 0.889 |
| 9 | TCGA-FT-A61P-01A-11R-A30C-07 | — | — | 0.886 |
| 10 | R303 | — | — | 0.882 |