SRR1394147
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- OXIDATIVE_PHOSPHORYLATION+0.285
- PROTEIN_SECRETION+0.270
- MYC_TARGETS_V1+0.190
- ANDROGEN_RESPONSE+0.153
- UNFOLDED_PROTEIN_RESPONSE+0.118
- DNA_REPAIR+0.102
- KRAS_SIGNALING_DN+0.100
- PI3K_AKT_MTOR_SIGNALING+0.074
- PEROXISOME+0.046
- SPERMATOGENESIS+0.015
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.577
- INTERFERON_GAMMA_RESPONSE-0.541
- INFLAMMATORY_RESPONSE-0.509
- TNFA_SIGNALING_VIA_NFKB-0.504
- IL6_JAK_STAT3_SIGNALING-0.497
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.481
- ALLOGRAFT_REJECTION-0.473
- COAGULATION-0.465
- ANGIOGENESIS-0.463
- TGF_BETA_SIGNALING-0.423
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1387875 | GTEX | — | 0.972 |
| 2 | SRR1432321 | GTEX | — | 0.967 |
| 3 | SRR1363810 | GTEX | — | 0.964 |
| 4 | SRR1325665 | GTEX | — | 0.964 |
| 5 | SRR1477773 | GTEX | — | 0.963 |
| 6 | SRR1315842 | GTEX | — | 0.963 |
| 7 | SRR1374246 | GTEX | — | 0.961 |
| 8 | SRR1405224 | GTEX | — | 0.957 |
| 9 | SRR608718 | GTEX | — | 0.955 |
| 10 | SRR1467364 | GTEX | — | 0.954 |