44b69c7c-6c36-48ef-9cf6-c287e0a5f917
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- age_years
- 74.4421629021218
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.430
- E2F_TARGETS+0.370
- G2M_CHECKPOINT+0.350
- PANCREAS_BETA_CELLS+0.340
- ANGIOGENESIS+0.230
- INTERFERON_GAMMA_RESPONSE+0.210
- MYC_TARGETS_V1+0.210
- KRAS_SIGNALING_DN+0.180
- MITOTIC_SPINDLE+0.160
- SPERMATOGENESIS+0.160
Top 10 suppressed
- TGF_BETA_SIGNALING-0.350
- HEDGEHOG_SIGNALING-0.300
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.290
- ALLOGRAFT_REJECTION-0.270
- APICAL_SURFACE-0.270
- UNFOLDED_PROTEIN_RESPONSE-0.250
- HYPOXIA-0.210
- NOTCH_SIGNALING-0.200
- PROTEIN_SECRETION-0.190
- UV_RESPONSE_DN-0.180
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR12202474 | — | — | 0.671 |
| 2 | aa786193-fb52-46b2-a71a-1b94cbf47810 | — | — | 0.665 |
| 3 | TCGA-BA-A6DE-01A-22R-A31N-07 | — | — | 0.663 |
| 4 | BS_YEW22W35 | high-grade glioma | — | 0.657 |
| 5 | SRR8518294 | — | E | 0.644 |
| 6 | TCGA-EW-A1PC-01B-11R-A21T-07 | — | C | 0.644 |
| 7 | SRR25617935 | — | E | 0.642 |
| 8 | R219 | — | — | 0.634 |
| 9 | ULC0564T_S96 | — | cohortA1 | 0.627 |
| 10 | C3L-01000 | — | cohortA4 | 0.625 |