8bcf201b-a2ac-4026-ace4-39a0d915da41
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
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- cancer_type_detailed
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- subtype
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GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- KRAS_SIGNALING_DN+0.400
- PANCREAS_BETA_CELLS+0.400
- ALLOGRAFT_REJECTION+0.300
- ANGIOGENESIS+0.300
- ESTROGEN_RESPONSE_LATE+0.300
- IL6_JAK_STAT3_SIGNALING+0.300
- KRAS_SIGNALING_UP+0.300
- TNFA_SIGNALING_VIA_NFKB+0.300
- APICAL_SURFACE+0.200
- COAGULATION+0.200
Top 10 suppressed
- E2F_TARGETS-0.600
- MYC_TARGETS_V2-0.600
- G2M_CHECKPOINT-0.500
- MITOTIC_SPINDLE-0.500
- MTORC1_SIGNALING-0.500
- MYC_TARGETS_V1-0.500
- DNA_REPAIR-0.400
- UNFOLDED_PROTEIN_RESPONSE-0.400
- OXIDATIVE_PHOSPHORYLATION-0.300
- CHOLESTEROL_HOMEOSTASIS-0.200
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
3 twins match this tumor's tissue · 7 come from a different tissue of origin ← cross-tissue dominant
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1367128 | GTEX | — | 0.919 |
| 2 | MDT-AP-0746 | Med | Medulloblastoma | 0.918 |
| 3 | ERR2598336 | fetal | fetal | 0.910 |
| 4 | SRR1317853 | GTEX | — | 0.899 |
| 5 | SRR602839 | GTEX | — | 0.899 |
| 6 | MNG1146 | — | — | 0.898 |
| 7 | SRR1797289 | — | cohortMD2 | 0.896 |
| 8 | SRR1375203 | GTEX | — | 0.894 |
| 9 | MDT-AP-1215 | Med | Medulloblastoma | 0.894 |
| 10 | MNG907 | — | — | 0.894 |