b09c5d28-8a02-4343-b678-07cbf351ed44
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
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- cancer_type_detailed
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- subtype
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GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- E2F_TARGETS+0.400
- G2M_CHECKPOINT+0.400
- MITOTIC_SPINDLE+0.400
- UNFOLDED_PROTEIN_RESPONSE+0.400
- GLYCOLYSIS+0.300
- OXIDATIVE_PHOSPHORYLATION+0.300
- PROTEIN_SECRETION+0.300
- SPERMATOGENESIS+0.300
- ADIPOGENESIS+0.200
- MTORC1_SIGNALING+0.200
Top 10 suppressed
- ALLOGRAFT_REJECTION-0.600
- INTERFERON_GAMMA_RESPONSE-0.600
- IL6_JAK_STAT3_SIGNALING-0.500
- INFLAMMATORY_RESPONSE-0.500
- INTERFERON_ALPHA_RESPONSE-0.500
- COMPLEMENT-0.400
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.400
- KRAS_SIGNALING_UP-0.400
- TNFA_SIGNALING_VIA_NFKB-0.400
- APOPTOSIS-0.300
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MNG797 | — | — | 0.902 |
| 2 | MNG1195 | — | — | 0.889 |
| 3 | SRR5088859 | — | — | 0.887 |
| 4 | 236350e9-8964-42ae-8880-d2f2281ff993 | — | — | 0.878 |
| 5 | SAMN03290931 | — | — | 0.877 |
| 6 | 20120209.TNBC | — | E | 0.869 |
| 7 | R6 | — | — | 0.865 |
| 8 | MDT-AP-2956 | Med | Medulloblastoma | 0.862 |
| 9 | 49319954-0844-4fbc-a931-df0e4cdbcb14 | — | — | 0.860 |
| 10 | C3L-02649 | — | cohortMD1 | 0.859 |