SRR23303753
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V1+0.550
- PROTEIN_SECRETION+0.520
- UNFOLDED_PROTEIN_RESPONSE+0.500
- MTORC1_SIGNALING+0.490
- OXIDATIVE_PHOSPHORYLATION+0.480
- E2F_TARGETS+0.350
- DNA_REPAIR+0.330
- MYC_TARGETS_V2+0.330
- G2M_CHECKPOINT+0.300
- P53_PATHWAY+0.270
Top 10 suppressed
- ALLOGRAFT_REJECTION-0.450
- KRAS_SIGNALING_DN-0.440
- INFLAMMATORY_RESPONSE-0.400
- IL6_JAK_STAT3_SIGNALING-0.380
- INTERFERON_GAMMA_RESPONSE-0.320
- APICAL_SURFACE-0.290
- COMPLEMENT-0.270
- KRAS_SIGNALING_UP-0.270
- COAGULATION-0.260
- PANCREAS_BETA_CELLS-0.260
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
6 twins match this tumor's tissue · 4 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | BS_KSKZ9J7J | Embryonal tumors | — | 0.930 |
| 2 | BS_G23JJAZY | Supratentorial Ependymoma | — | 0.915 |
| 3 | BS_G23JJAZY | EPN | Supratentorial EPN | 0.885 |
| 4 | R122 | — | — | 0.884 |
| 5 | MNG449 | — | — | 0.878 |
| 6 | EE4F9349-F750-4471-BFE7-7230784569E1 | — | — | 0.877 |
| 7 | R143 | — | — | 0.862 |
| 8 | TCGA-94-7557-01A-11R-2125-07 | — | cohortMD1 | 0.859 |
| 9 | BS_7G42J2SK | Supratentorial Ependymoma | — | 0.855 |
| 10 | TCGA-21-1075-01A-01R-0692-07 | — | cohortSQ2 | 0.854 |