SRR1433644
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- KRAS_SIGNALING_DN+0.166
- SPERMATOGENESIS+0.124
- DNA_REPAIR+0.084
- MYC_TARGETS_V2-0.078
- MITOTIC_SPINDLE-0.092
- WNT_BETA_CATENIN_SIGNALING-0.095
- APICAL_JUNCTION-0.107
- PANCREAS_BETA_CELLS-0.108
- MYOGENESIS-0.138
- PI3K_AKT_MTOR_SIGNALING-0.139
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.538
- TNFA_SIGNALING_VIA_NFKB-0.505
- INTERFERON_GAMMA_RESPONSE-0.489
- IL6_JAK_STAT3_SIGNALING-0.483
- INFLAMMATORY_RESPONSE-0.482
- TGF_BETA_SIGNALING-0.452
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.443
- APOPTOSIS-0.441
- ANGIOGENESIS-0.438
- ALLOGRAFT_REJECTION-0.430
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1338669 | GTEX | — | 0.989 |
| 2 | SRR1394936 | GTEX | — | 0.985 |
| 3 | SRR1328960 | GTEX | — | 0.985 |
| 4 | SRR1456514 | GTEX | — | 0.985 |
| 5 | SRR1377984 | GTEX | — | 0.984 |
| 6 | SRR1459033 | GTEX | — | 0.984 |
| 7 | SRR1434271 | GTEX | — | 0.981 |
| 8 | SRR1400375 | GTEX | — | 0.980 |
| 9 | SRR1439850 | GTEX | — | 0.979 |
| 10 | SRR1322291 | GTEX | — | 0.979 |
Per-pathway drug coverage
For each elevated pathway in this tumor, the best-reversing drug across the catalog. Uncovered pathways = unmet need at pathway level for this one patient.
0 of 3 elevated pathways have at least one drug that meaningfully reverses them.
| Pathway (elevated) | tumor score | Best drug | reversal magnitude |
|---|---|---|---|
| KRAS_SIGNALING_DN | 0.166 | Remibrutinib | — uncovered |
| SPERMATOGENESIS | 0.124 | Inavolisib | — uncovered |
| DNA_REPAIR | 0.084 | Idelalisib | — uncovered |