SRR1439850
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- KRAS_SIGNALING_DN+0.184
- SPERMATOGENESIS+0.045
- DNA_REPAIR+0.028
- MITOTIC_SPINDLE+0.004
- MYC_TARGETS_V2-0.037
- PI3K_AKT_MTOR_SIGNALING-0.044
- PANCREAS_BETA_CELLS-0.060
- G2M_CHECKPOINT-0.061
- E2F_TARGETS-0.096
- MYOGENESIS-0.119
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.589
- INTERFERON_GAMMA_RESPONSE-0.516
- TNFA_SIGNALING_VIA_NFKB-0.480
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.469
- APOPTOSIS-0.456
- IL6_JAK_STAT3_SIGNALING-0.448
- TGF_BETA_SIGNALING-0.433
- INFLAMMATORY_RESPONSE-0.426
- NOTCH_SIGNALING-0.417
- ANGIOGENESIS-0.409
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1429935 | GTEX | — | 0.991 |
| 2 | SRR1402513 | GTEX | — | 0.987 |
| 3 | SRR1338323 | GTEX | — | 0.986 |
| 4 | SRR1324452 | GTEX | — | 0.985 |
| 5 | SRR1317808 | GTEX | — | 0.984 |
| 6 | SRR1457418 | GTEX | — | 0.984 |
| 7 | SRR1431366 | GTEX | — | 0.984 |
| 8 | SRR1434271 | GTEX | — | 0.982 |
| 9 | SRR1384234 | GTEX | — | 0.982 |
| 10 | SRR1465132 | GTEX | — | 0.980 |
Per-pathway drug coverage
For each elevated pathway in this tumor, the best-reversing drug across the catalog. Uncovered pathways = unmet need at pathway level for this one patient.
0 of 4 elevated pathways have at least one drug that meaningfully reverses them.
| Pathway (elevated) | tumor score | Best drug | reversal magnitude |
|---|---|---|---|
| KRAS_SIGNALING_DN | 0.184 | Remibrutinib | — uncovered |
| SPERMATOGENESIS | 0.045 | Inavolisib | — uncovered |
| DNA_REPAIR | 0.028 | Idelalisib | — uncovered |
| MITOTIC_SPINDLE | 0.004 | Inavolisib | — uncovered |