SRR8613762
— · A
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- A
- subtype
- A
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- WNT_BETA_CATENIN_SIGNALING+0.360
- APICAL_SURFACE+0.340
- HEDGEHOG_SIGNALING+0.310
- UV_RESPONSE_DN+0.310
- APICAL_JUNCTION+0.270
- MYOGENESIS+0.260
- INTERFERON_ALPHA_RESPONSE+0.220
- INTERFERON_GAMMA_RESPONSE+0.210
- IL6_JAK_STAT3_SIGNALING+0.200
- KRAS_SIGNALING_UP+0.160
Top 10 suppressed
- E2F_TARGETS-0.660
- MYC_TARGETS_V1-0.640
- MTORC1_SIGNALING-0.570
- MYC_TARGETS_V2-0.550
- G2M_CHECKPOINT-0.540
- OXIDATIVE_PHOSPHORYLATION-0.540
- PROTEIN_SECRETION-0.480
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.440
- UNFOLDED_PROTEIN_RESPONSE-0.440
- DNA_REPAIR-0.390
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-50-8457-01A-11R-2326-07 | — | cohortA1 | 0.910 |
| 2 | TCGA-86-A4P8-01A-11R-A24X-07 | — | cohortA1 | 0.889 |
| 3 | SRR8613801 | — | A | 0.887 |
| 4 | TCGA-NJ-A55A-01A-11R-A262-07 | — | cohortA1 | 0.884 |
| 5 | SRR8526724 | — | cohortA1 | 0.880 |
| 6 | TCGA-93-A4JP-01A-11R-A24X-07 | — | cohortA1 | 0.878 |
| 7 | MNG690 | — | — | 0.878 |
| 8 | TCGA-A2-A4RY-01A-31R-A266-07 | — | A | 0.872 |
| 9 | TCGA-86-A4P7-01A-11R-A24X-07 | — | cohortA1 | 0.869 |
| 10 | TCGA-55-A57B-01A-12R-A39D-07 | — | cohortA1 | 0.862 |
Per-pathway drug coverage
For each elevated pathway in this tumor, the best-reversing drug across the catalog. Uncovered pathways = unmet need at pathway level for this one patient.
0 of 18 elevated pathways have at least one drug that meaningfully reverses them.
| Pathway (elevated) | tumor score | Best drug | reversal magnitude |
|---|---|---|---|
| WNT_BETA_CATENIN_SIGNALING | 0.360 | Inavolisib | — uncovered |
| APICAL_SURFACE | 0.340 | Temsirolimus | — uncovered |
| HEDGEHOG_SIGNALING | 0.310 | Inavolisib | — uncovered |
| UV_RESPONSE_DN | 0.310 | Inavolisib | — uncovered |
| APICAL_JUNCTION | 0.270 | Inavolisib | — uncovered |
| MYOGENESIS | 0.260 | Inavolisib | — uncovered |
| INTERFERON_ALPHA_RESPONSE | 0.220 | Inavolisib | — uncovered |
| INTERFERON_GAMMA_RESPONSE | 0.210 | Idelalisib | — uncovered |
| IL6_JAK_STAT3_SIGNALING | 0.200 | Inavolisib | — uncovered |
| KRAS_SIGNALING_UP | 0.160 | Inavolisib | — uncovered |
| KRAS_SIGNALING_DN | 0.080 | Remibrutinib | — uncovered |
| NOTCH_SIGNALING | 0.080 | Inavolisib | — uncovered |
| ESTROGEN_RESPONSE_EARLY | 0.070 | Inavolisib | — uncovered |
| IL2_STAT5_SIGNALING | 0.070 | Idelalisib | — uncovered |
| TNFA_SIGNALING_VIA_NFKB | 0.060 | Inavolisib | — uncovered |
| ALLOGRAFT_REJECTION | 0.050 | Idelalisib | — uncovered |
| BILE_ACID_METABOLISM | 0.030 | Inavolisib | — uncovered |
| P53_PATHWAY | 0.030 | Idelalisib | — uncovered |