BS_J70GK8SM
Supratentorial Ependymoma
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- Supratentorial Ependymoma
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- Supratentorial Ependymoma
- overall_survival_months
- 25.492772667542706
- age_years
- 5.208
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.524
- INTERFERON_GAMMA_RESPONSE+0.502
- E2F_TARGETS+0.488
- ALLOGRAFT_REJECTION+0.481
- TGF_BETA_SIGNALING+0.472
- PROTEIN_SECRETION+0.466
- G2M_CHECKPOINT+0.416
- ANDROGEN_RESPONSE+0.383
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.383
- INFLAMMATORY_RESPONSE+0.377
Top 10 suppressed
- HEDGEHOG_SIGNALING-0.269
- KRAS_SIGNALING_DN-0.242
- PANCREAS_BETA_CELLS-0.226
- CHOLESTEROL_HOMEOSTASIS-0.182
- FATTY_ACID_METABOLISM-0.130
- MYC_TARGETS_V2-0.099
- PEROXISOME-0.088
- MYOGENESIS-0.068
- UV_RESPONSE_UP-0.068
- XENOBIOTIC_METABOLISM-0.057
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR934737 | — | — | 0.937 |
| 2 | TCGA-44-2668-01A-01R-A278-07 | — | cohortA1 | 0.892 |
| 3 | MDT-AP-3264 | Med | Medulloblastoma | 0.889 |
| 4 | SRR934802 | — | — | 0.880 |
| 5 | TCGA-98-7454-01A-11R-2045-07 | — | cohortMD2 | 0.875 |
| 6 | 738B9C39-A73F-4BD5-A8D4-3F75B9E14569 | — | — | 0.873 |
| 7 | TCGA-55-6978-01A-11R-1949-07 | — | cohortA1 | 0.873 |
| 8 | BS_0WQJP6ZG | Supratentorial Ependymoma | — | 0.869 |
| 9 | TCGA-AR-A24S-01A-11R-A169-07 | — | A | 0.868 |
| 10 | TCGA-DK-A2I4-01A-11R-A21D-07 | — | — | 0.868 |