TCGA-NJ-A4YF-01A-12R-A262-07
— · cohortA3
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortA3
- subtype
- cohortA3
- age_years
- 50
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- OXIDATIVE_PHOSPHORYLATION+0.390
- KRAS_SIGNALING_DN+0.270
- SPERMATOGENESIS+0.260
- PANCREAS_BETA_CELLS+0.250
- COAGULATION+0.110
- MYOGENESIS+0.110
- ANGIOGENESIS+0.090
- BILE_ACID_METABOLISM+0.060
- APICAL_SURFACE+0.020
- ESTROGEN_RESPONSE_EARLY+0.020
Top 10 suppressed
- TGF_BETA_SIGNALING-0.580
- INTERFERON_ALPHA_RESPONSE-0.550
- MYC_TARGETS_V1-0.500
- INTERFERON_GAMMA_RESPONSE-0.490
- G2M_CHECKPOINT-0.460
- PROTEIN_SECRETION-0.460
- UV_RESPONSE_DN-0.450
- E2F_TARGETS-0.440
- MITOTIC_SPINDLE-0.440
- PI3K_AKT_MTOR_SIGNALING-0.440
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
6 twins match this tumor's tissue · 4 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MNG759 | — | — | 0.916 |
| 2 | MNG543 | — | — | 0.907 |
| 3 | 4e64826b-fffb-4430-bc34-ea6086e89a0a | — | — | 0.893 |
| 4 | SRR1313932 | GTEX | — | 0.890 |
| 5 | MNG506 | — | — | 0.890 |
| 6 | MNG604 | — | — | 0.886 |
| 7 | SRR1418923 | GTEX | — | 0.879 |
| 8 | SRR1311285 | GTEX | — | 0.878 |
| 9 | SRR1349013 | GTEX | — | 0.877 |
| 10 | 3d1f44d8-6084-47cb-b57b-099f2cd1fa0e | — | — | 0.875 |