SRR1797263
— · cohortSC
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortSC
- subtype
- cohortSC
- age_years
- 64
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V2+0.410
- PANCREAS_BETA_CELLS+0.350
- E2F_TARGETS+0.270
- G2M_CHECKPOINT+0.210
- APICAL_SURFACE+0.190
- DNA_REPAIR+0.170
- KRAS_SIGNALING_DN+0.170
- SPERMATOGENESIS+0.170
- MITOTIC_SPINDLE+0.150
- ESTROGEN_RESPONSE_EARLY+0.080
Top 10 suppressed
- TGF_BETA_SIGNALING-0.490
- ANGIOGENESIS-0.440
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.430
- TNFA_SIGNALING_VIA_NFKB-0.400
- COMPLEMENT-0.390
- INFLAMMATORY_RESPONSE-0.390
- UV_RESPONSE_DN-0.380
- COAGULATION-0.370
- PROTEIN_SECRETION-0.370
- IL6_JAK_STAT3_SIGNALING-0.360
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | BS_DBEX7AG2 | Embryonal tumors | — | 0.857 |
| 2 | AUR-AFR5-TTM1-A-1-1-R-A743-41 | — | E | 0.854 |
| 3 | TCGA-E9-A3HO-01A-11R-A213-07 | — | B | 0.851 |
| 4 | TCGA-37-A5EN-01A-21R-A26W-07 | — | cohortSQ2 | 0.843 |
| 5 | SRR8526719 | — | cohortMD1 | 0.841 |
| 6 | R233 | — | — | 0.835 |
| 7 | TCGA-NC-A5HR-01A-21R-A26W-07 | — | cohortSQ2 | 0.833 |
| 8 | SRR23303756 | — | — | 0.833 |
| 9 | BS_VPBMDMQX | medulloblastoma | — | 0.833 |
| 10 | SRR8518343 | — | E | 0.831 |