MBCProject_0235_T1_RNA
— · A
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- A
- subtype
- A
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- UV_RESPONSE_DN+0.500
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.480
- MYOGENESIS+0.410
- ANGIOGENESIS+0.380
- TGF_BETA_SIGNALING+0.380
- CHOLESTEROL_HOMEOSTASIS+0.340
- NOTCH_SIGNALING+0.280
- APICAL_JUNCTION+0.210
- HEDGEHOG_SIGNALING+0.210
- ADIPOGENESIS+0.200
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.620
- E2F_TARGETS-0.610
- G2M_CHECKPOINT-0.580
- INTERFERON_GAMMA_RESPONSE-0.500
- MYC_TARGETS_V2-0.450
- ALLOGRAFT_REJECTION-0.410
- MYC_TARGETS_V1-0.410
- MTORC1_SIGNALING-0.390
- ESTROGEN_RESPONSE_LATE-0.370
- UNFOLDED_PROTEIN_RESPONSE-0.340
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | C3N-01021 | — | cohortA1 | 0.858 |
| 2 | SRR8518453 | — | F | 0.844 |
| 3 | TCGA-AN-A0FS-01A-11R-A034-07 | — | A | 0.842 |
| 4 | SRR8613790 | — | A | 0.830 |
| 5 | SRR26320067 | — | — | 0.829 |
| 6 | TCGA-CV-7103-01A-21R-2016-07 | — | — | 0.829 |
| 7 | C3L-02834 | — | cohortA1 | 0.827 |
| 8 | SRR13780259 | — | cohortA1 | 0.821 |
| 9 | TCGA-BH-A0EA-01A-11R-A115-07 | — | A | 0.818 |
| 10 | MBCProject_7544_T2_RNA | — | A | 0.816 |