959c268c-637f-4f39-a254-a505c57e8448
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
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- cancer_type_detailed
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- subtype
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GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MITOTIC_SPINDLE+0.400
- G2M_CHECKPOINT+0.300
- PROTEIN_SECRETION+0.300
- TGF_BETA_SIGNALING+0.300
- ANDROGEN_RESPONSE+0.200
- HEME_METABOLISM+0.200
- PEROXISOME+0.200
- UV_RESPONSE_DN+0.200
- WNT_BETA_CATENIN_SIGNALING+0.200
- DNA_REPAIR+0.100
Top 10 suppressed
- ALLOGRAFT_REJECTION-0.600
- IL6_JAK_STAT3_SIGNALING-0.500
- INFLAMMATORY_RESPONSE-0.500
- INTERFERON_ALPHA_RESPONSE-0.500
- INTERFERON_GAMMA_RESPONSE-0.500
- ANGIOGENESIS-0.400
- APICAL_SURFACE-0.400
- COMPLEMENT-0.300
- HYPOXIA-0.300
- IL2_STAT5_SIGNALING-0.300
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
6 twins match this tumor's tissue · 4 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MDT-AP-0211 | Med | Medulloblastoma | 0.873 |
| 2 | 62b39052-bdb9-4ba6-9eb0-f117480c98a8 | — | — | 0.861 |
| 3 | MDT-AP-3325 | Med | Medulloblastoma | 0.856 |
| 4 | MDT-AP-0194 | Med | Medulloblastoma | 0.853 |
| 5 | TCGA-D8-A1XR-01A-11R-A14M-07 | — | B | 0.850 |
| 6 | TCGA-E9-A1R7-01A-11R-A14M-07 | — | B | 0.849 |
| 7 | TCGA-A8-A0AB-01A-11R-A034-07 | — | B | 0.846 |
| 8 | MDT-AP-3311 | Med | Medulloblastoma | 0.844 |
| 9 | SRR9879265 | — | cohortMD1 | 0.837 |
| 10 | MNG420 | — | — | 0.835 |