TCGA-55-7728-01A-11R-2187-07
— · cohortA1
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortA1
- subtype
- cohortA1
- age_years
- 64
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- COAGULATION+0.430
- COMPLEMENT+0.390
- INFLAMMATORY_RESPONSE+0.390
- IL6_JAK_STAT3_SIGNALING+0.370
- ALLOGRAFT_REJECTION+0.360
- KRAS_SIGNALING_DN+0.360
- INTERFERON_ALPHA_RESPONSE+0.350
- KRAS_SIGNALING_UP+0.310
- INTERFERON_GAMMA_RESPONSE+0.290
- PANCREAS_BETA_CELLS+0.240
Top 10 suppressed
- MYC_TARGETS_V1-0.720
- MYC_TARGETS_V2-0.650
- E2F_TARGETS-0.630
- UNFOLDED_PROTEIN_RESPONSE-0.620
- G2M_CHECKPOINT-0.590
- PROTEIN_SECRETION-0.550
- MTORC1_SIGNALING-0.530
- OXIDATIVE_PHOSPHORYLATION-0.500
- DNA_REPAIR-0.480
- MITOTIC_SPINDLE-0.390
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
8 twins match this tumor's tissue · 2 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-55-8510-01A-11R-2403-07 | — | cohortA1 | 0.922 |
| 2 | BS_Y7F9E2E9 | low-grade glioma | — | 0.920 |
| 3 | TCGA-38-A44F-01A-11R-A24H-07 | — | cohortA1 | 0.920 |
| 4 | BS_21RE8W46 | pilocytic astrocytoma | — | 0.920 |
| 5 | TCGA-97-A4M7-01A-11R-A24X-07 | — | cohortA1 | 0.914 |
| 6 | 7cebd572-2edd-4351-b59e-fb4417a46b9c | — | — | 0.914 |
| 7 | TCGA-97-A4M2-01A-12R-A24X-07 | — | cohortA1 | 0.910 |
| 8 | TCGA-L9-A444-01A-21R-A24H-07 | — | cohortA1 | 0.909 |
| 9 | ee0e68bf-7fa0-4edc-a9df-30a63c2db34a | — | — | 0.909 |
| 10 | SRR6013478 | — | cohortMD2 | 0.909 |