TCGA-66-2727-01A-01R-0980-07
— · cohortSQ2
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortSQ2
- subtype
- cohortSQ2
- age_years
- 55
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V1+0.650
- E2F_TARGETS+0.640
- MYC_TARGETS_V2+0.590
- G2M_CHECKPOINT+0.530
- MTORC1_SIGNALING+0.530
- OXIDATIVE_PHOSPHORYLATION+0.530
- UNFOLDED_PROTEIN_RESPONSE+0.430
- DNA_REPAIR+0.380
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.380
- CHOLESTEROL_HOMEOSTASIS+0.370
Top 10 suppressed
- MYOGENESIS-0.320
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.230
- KRAS_SIGNALING_UP-0.220
- COAGULATION-0.210
- NOTCH_SIGNALING-0.210
- TNFA_SIGNALING_VIA_NFKB-0.200
- HEDGEHOG_SIGNALING-0.190
- APICAL_JUNCTION-0.180
- INFLAMMATORY_RESPONSE-0.160
- HYPOXIA-0.150
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SJEPD031238_D1.RNA-Seq | EPN | EPN Tumor | 0.879 |
| 2 | TCGA-HQ-A5ND-01A-11R-A26T-07 | — | — | 0.870 |
| 3 | TCGA-AO-A0JD-01A-11R-A056-07 | — | C | 0.869 |
| 4 | TCGA-39-5016-01A-01R-1443-07 | — | cohortSQ2 | 0.864 |
| 5 | TCGA-A8-A09W-01A-11R-A00Z-07 | — | B | 0.862 |
| 6 | SRR17866821 | — | — | 0.860 |
| 7 | feccc57b-a987-4dd7-babf-1a8982bd64cc | — | — | 0.859 |
| 8 | TCGA-05-4415-01A-22R-1858-07 | — | cohortA4 | 0.857 |
| 9 | 81b828aa-cb06-4790-ba3e-efaa39f4eeef | — | — | 0.853 |
| 10 | TCGA-GU-AATQ-01A-11R-A39I-07 | — | — | 0.851 |