20040108.LumA
— · B
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- B
- subtype
- B
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- OXIDATIVE_PHOSPHORYLATION+0.500
- ESTROGEN_RESPONSE_EARLY+0.390
- ESTROGEN_RESPONSE_LATE+0.260
- MYC_TARGETS_V1+0.260
- FATTY_ACID_METABOLISM+0.210
- ANDROGEN_RESPONSE+0.190
- DNA_REPAIR+0.190
- MYC_TARGETS_V2+0.190
- ADIPOGENESIS+0.110
- HEME_METABOLISM+0.110
Top 10 suppressed
- INTERFERON_GAMMA_RESPONSE-0.380
- ALLOGRAFT_REJECTION-0.370
- E2F_TARGETS-0.350
- NOTCH_SIGNALING-0.350
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.320
- G2M_CHECKPOINT-0.320
- HEDGEHOG_SIGNALING-0.310
- KRAS_SIGNALING_UP-0.280
- IL6_JAK_STAT3_SIGNALING-0.260
- TNFA_SIGNALING_VIA_NFKB-0.260
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | 20140146.LumB | — | B | 0.815 |
| 2 | TCGA-OL-A6VR-01A-32R-A33J-07 | — | B | 0.810 |
| 3 | SRR1313095 | — | B | 0.808 |
| 4 | TCGA-BH-A18S-01A-11R-A12D-07 | — | B | 0.808 |
| 5 | TCGA-D8-A1JI-01A-11R-A13Q-07 | — | B | 0.806 |
| 6 | SRR10900578 | — | — | 0.804 |
| 7 | TCGA-E2-A156-01A-11R-A12D-07 | — | B | 0.793 |
| 8 | TCGA-D8-A1JS-01A-11R-A13Q-07 | — | B | 0.790 |
| 9 | TCGA-E2-A15E-06A-11R-A12D-07 | — | B | 0.788 |
| 10 | TCGA-TN-A7HJ-01A-12R-A34R-07 | — | — | 0.779 |