SRR5088821
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- INTERFERON_ALPHA_RESPONSE+0.500
- INTERFERON_GAMMA_RESPONSE+0.500
- ALLOGRAFT_REJECTION+0.400
- INFLAMMATORY_RESPONSE+0.400
- COAGULATION+0.300
- COMPLEMENT+0.300
- E2F_TARGETS+0.300
- IL6_JAK_STAT3_SIGNALING+0.300
- MYC_TARGETS_V2+0.300
- PANCREAS_BETA_CELLS+0.300
Top 10 suppressed
- MYC_TARGETS_V1-0.300
- OXIDATIVE_PHOSPHORYLATION-0.300
- UV_RESPONSE_DN-0.300
- ANDROGEN_RESPONSE-0.200
- BILE_ACID_METABOLISM-0.200
- PEROXISOME-0.200
- PROTEIN_SECRETION-0.200
- UNFOLDED_PROTEIN_RESPONSE-0.200
- ADIPOGENESIS-0.100
- ESTROGEN_RESPONSE_LATE-0.100
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | R50 | — | — | 0.855 |
| 2 | TCGA-PL-A8LZ-01A-31R-A36F-07 | — | D | 0.822 |
| 3 | TCGA-OL-A66I-01A-21R-A29R-07 | — | D | 0.815 |
| 4 | TCGA-A2-A04Q-01A-21R-A034-07 | — | D | 0.813 |
| 5 | R317 | — | — | 0.810 |
| 6 | MNG1270 | — | — | 0.788 |
| 7 | TCGA-BH-A0BZ-01A-31R-A12P-07 | — | C | 0.784 |
| 8 | 20130243.TNBC | — | D | 0.782 |
| 9 | MBCProject_7544_T1_RNA | — | D | 0.782 |
| 10 | AUR-AFR5-TTP1-A-1-1-R-A743-41 | — | D | 0.775 |