ULC1427T_S35
— · cohortSQ2
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortSQ2
- subtype
- cohortSQ2
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.470
- E2F_TARGETS+0.450
- G2M_CHECKPOINT+0.420
- HYPOXIA+0.390
- MTORC1_SIGNALING+0.390
- HEDGEHOG_SIGNALING+0.370
- MYC_TARGETS_V1+0.370
- TNFA_SIGNALING_VIA_NFKB+0.370
- ANGIOGENESIS+0.360
- INFLAMMATORY_RESPONSE+0.300
Top 10 suppressed
- HEME_METABOLISM-0.160
- DNA_REPAIR-0.110
- PEROXISOME-0.110
- PROTEIN_SECRETION-0.110
- ADIPOGENESIS-0.070
- UV_RESPONSE_DN-0.060
- NOTCH_SIGNALING-0.050
- BILE_ACID_METABOLISM-0.030
- XENOBIOTIC_METABOLISM-0.030
- OXIDATIVE_PHOSPHORYLATION+0.000
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
7 twins match this tumor's tissue · 3 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | 20060013.TNBC | — | E | 0.805 |
| 2 | MDT-AP-3087 | Med | Medulloblastoma | 0.804 |
| 3 | SRR6013532 | — | cohortSQ2 | 0.802 |
| 4 | DRR168559 | — | — | 0.801 |
| 5 | SRR5088817 | — | — | 0.800 |
| 6 | MDT-AP-1277 | Med | Medulloblastoma | 0.797 |
| 7 | TCGA-85-8666-01A-11R-2403-07 | — | cohortSQ1 | 0.794 |
| 8 | DRR168558 | — | — | 0.790 |
| 9 | BS_1D6PZNKN | Diffuse intrinsic pontine glioma | — | 0.788 |
| 10 | TCGA-51-4079-01A-01R-1100-07 | — | cohortSQ2 | 0.784 |