X6e4edcae.68aa.4e0a.80bc.d8114f132bba
— · cohortMD2
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- cohortMD2
- subtype
- cohortMD2
- age_years
- 41
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.610
- TNFA_SIGNALING_VIA_NFKB+0.580
- IL6_JAK_STAT3_SIGNALING+0.500
- INFLAMMATORY_RESPONSE+0.480
- ALLOGRAFT_REJECTION+0.440
- INTERFERON_GAMMA_RESPONSE+0.400
- ANGIOGENESIS+0.390
- MYOGENESIS+0.390
- COAGULATION+0.370
- COMPLEMENT+0.370
Top 10 suppressed
- E2F_TARGETS-0.600
- MYC_TARGETS_V2-0.530
- G2M_CHECKPOINT-0.500
- MYC_TARGETS_V1-0.500
- MITOTIC_SPINDLE-0.330
- GLYCOLYSIS-0.300
- DNA_REPAIR-0.270
- MTORC1_SIGNALING-0.180
- OXIDATIVE_PHOSPHORYLATION-0.180
- PEROXISOME-0.120
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | f54ad6e1.b983.4270.8925.848d56f2d461 | — | cohortMD2 | 0.925 |
| 2 | TCGA-A2-A0EN-01A-13R-A084-07 | — | A | 0.919 |
| 3 | C3L-02164 | — | cohortMD2 | 0.918 |
| 4 | SRR23303755 | — | — | 0.918 |
| 5 | SRR1797302 | — | cohortMD2 | 0.917 |
| 6 | TCGA-55-8091-01A-11R-2241-07 | — | cohortA1 | 0.916 |
| 7 | 2eaa09cd-8e3e-4de9-ab96-7a290d780a01 | — | — | 0.915 |
| 8 | MBCProject_0734_T1A_RNA | — | A | 0.913 |
| 9 | BS_52426AMF | low-grade glioma | — | 0.910 |
| 10 | TCGA-22-4596-01A-01R-1201-07 | — | cohortA1 | 0.909 |