BS_W644VEVE
Med · Medulloblastoma
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- Med
- cancer_type_detailed
- —
- subtype
- Medulloblastoma
- cancer_type
- Med
- subtype
- Medulloblastoma
- overall_survival_months
- 23.28
- os_event
- false
- age_years
- 9.074
- new_clusters
- S2
- umap1_2d
- -0.473284102
- umap2_2d
- -8.624517679
- umap1_3d
- -2.774153398
- umap2_3d
- -2.110901329
- umap3_3d
- 6.146211235
- dataset
- Med-CBTN
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- MYC_TARGETS_V2+0.620
- G2M_CHECKPOINT+0.520
- E2F_TARGETS+0.500
- MYC_TARGETS_V1+0.490
- UNFOLDED_PROTEIN_RESPONSE+0.240
- MTORC1_SIGNALING+0.230
- SPERMATOGENESIS+0.210
- MITOTIC_SPINDLE+0.180
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.170
- KRAS_SIGNALING_DN+0.140
Top 10 suppressed
- XENOBIOTIC_METABOLISM-0.330
- INTERFERON_ALPHA_RESPONSE-0.270
- PROTEIN_SECRETION-0.260
- TGF_BETA_SIGNALING-0.230
- IL6_JAK_STAT3_SIGNALING-0.220
- INTERFERON_GAMMA_RESPONSE-0.220
- COAGULATION-0.210
- KRAS_SIGNALING_UP-0.200
- PI3K_AKT_MTOR_SIGNALING-0.200
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.180
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | BS_9NZ2D6AD | Med | Medulloblastoma | 0.830 |
| 2 | MDT-AP-1377 | Med | Medulloblastoma | 0.824 |
| 3 | MDT-AP-0426 | Med | Medulloblastoma | 0.822 |
| 4 | TCGA-C8-A1HJ-01A-11R-A13Q-07 | — | E | 0.819 |
| 5 | SRR8518152 | — | E | 0.814 |
| 6 | MDT-AP-3322 | Med | Medulloblastoma | 0.810 |
| 7 | BS_AM70R8RG | Med | Medulloblastoma | 0.810 |
| 8 | SJEPD001513_D1.RNA-Seq | EPN | Posterior Fossa EPN | 0.805 |
| 9 | TCGA-DK-A1AE-01A-11R-A13Y-07 | — | — | 0.799 |
| 10 | MNG715 | — | — | 0.799 |