SRR1354689
GTEX
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- GTEX
- cancer_type_detailed
- —
- subtype
- —
- cancer_type
- GTEX
- sex
- Male
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- OXIDATIVE_PHOSPHORYLATION+0.414
- PANCREAS_BETA_CELLS+0.324
- KRAS_SIGNALING_DN+0.272
- SPERMATOGENESIS+0.260
- REACTIVE_OXYGEN_SPECIES_PATHWAY+0.213
- FATTY_ACID_METABOLISM+0.107
- MYC_TARGETS_V1+0.080
- MYOGENESIS+0.029
- PROTEIN_SECRETION+0.023
- GLYCOLYSIS+0.015
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.524
- INTERFERON_GAMMA_RESPONSE-0.496
- IL6_JAK_STAT3_SIGNALING-0.490
- WNT_BETA_CATENIN_SIGNALING-0.406
- ANGIOGENESIS-0.365
- TNFA_SIGNALING_VIA_NFKB-0.354
- MITOTIC_SPINDLE-0.331
- TGF_BETA_SIGNALING-0.326
- IL2_STAT5_SIGNALING-0.323
- INFLAMMATORY_RESPONSE-0.317
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR1360563 | GTEX | — | 0.949 |
| 2 | SRR1435775 | GTEX | — | 0.947 |
| 3 | SRR1435020 | GTEX | — | 0.939 |
| 4 | SRR659235 | GTEX | — | 0.934 |
| 5 | SRR1367943 | GTEX | — | 0.934 |
| 6 | SRR1311086 | GTEX | — | 0.929 |
| 7 | SRR1387199 | GTEX | — | 0.928 |
| 8 | SRR1408208 | GTEX | — | 0.927 |
| 9 | SRR1437306 | GTEX | — | 0.927 |
| 10 | SRR1415095 | GTEX | — | 0.926 |