c8b9a438-4194-4243-a738-4e0bd4184f19
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
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- cancer_type_detailed
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- subtype
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GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- KRAS_SIGNALING_DN+0.200
- MYC_TARGETS_V1+0.200
- SPERMATOGENESIS+0.200
- OXIDATIVE_PHOSPHORYLATION+0.100
- ADIPOGENESIS+0.000
- PANCREAS_BETA_CELLS+0.000
- ANDROGEN_RESPONSE-0.100
- BILE_ACID_METABOLISM-0.100
- ESTROGEN_RESPONSE_EARLY-0.100
- HEME_METABOLISM-0.100
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.600
- INTERFERON_GAMMA_RESPONSE-0.600
- ALLOGRAFT_REJECTION-0.500
- ANGIOGENESIS-0.500
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.500
- IL6_JAK_STAT3_SIGNALING-0.500
- INFLAMMATORY_RESPONSE-0.500
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.500
- APICAL_JUNCTION-0.400
- COAGULATION-0.400
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
3 twins match this tumor's tissue · 7 come from a different tissue of origin ← cross-tissue dominant
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR10899984 | — | — | 0.912 |
| 2 | SRR1338669 | GTEX | — | 0.910 |
| 3 | SRR1398992 | GTEX | — | 0.908 |
| 4 | SRR1367870 | GTEX | — | 0.903 |
| 5 | MNG852 | — | — | 0.900 |
| 6 | SRR1404969 | GTEX | — | 0.897 |
| 7 | SRR1456514 | GTEX | — | 0.896 |
| 8 | SRR1479510 | GTEX | — | 0.895 |
| 9 | SRR1434867 | GTEX | — | 0.894 |
| 10 | SRR5088853 | — | — | 0.893 |