SRR10842367
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.500
- ANGIOGENESIS+0.400
- INFLAMMATORY_RESPONSE+0.400
- APICAL_JUNCTION+0.300
- COAGULATION+0.300
- COMPLEMENT+0.300
- HEDGEHOG_SIGNALING+0.300
- IL6_JAK_STAT3_SIGNALING+0.300
- INTERFERON_GAMMA_RESPONSE+0.300
- MYOGENESIS+0.300
Top 10 suppressed
- E2F_TARGETS-0.700
- G2M_CHECKPOINT-0.600
- MYC_TARGETS_V1-0.500
- MYC_TARGETS_V2-0.400
- OXIDATIVE_PHOSPHORYLATION-0.300
- SPERMATOGENESIS-0.300
- DNA_REPAIR-0.200
- MITOTIC_SPINDLE-0.200
- KRAS_SIGNALING_DN-0.100
- PANCREAS_BETA_CELLS-0.100
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
9 twins match this tumor's tissue · 1 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | TCGA-FD-A3SQ-01A-21R-A22U-07 | — | — | 0.878 |
| 2 | TCGA-64-5815-01A-01R-1628-07 | — | cohortA1 | 0.871 |
| 3 | SRR8392884 | — | cohortA1 | 0.867 |
| 4 | ERR2208941 | — | — | 0.863 |
| 5 | SRR13780273 | — | cohortMD2 | 0.862 |
| 6 | sclc3472_S37.txt | — | cohortMD2 | 0.861 |
| 7 | SRR6013590 | — | cohortA1 | 0.858 |
| 8 | GSM5359409 | — | — | 0.858 |
| 9 | BS_ZV9Z3SY6 | pilocytic astrocytoma | — | 0.857 |
| 10 | TCGA-CR-7386-01A-11R-2016-07 | — | — | 0.848 |