725c9ca0-31db-4dda-ac6d-9be7565e7cfe
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Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
- age_years
- 60
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- CHOLESTEROL_HOMEOSTASIS+0.310
- PEROXISOME+0.220
- TGF_BETA_SIGNALING+0.180
- OXIDATIVE_PHOSPHORYLATION+0.170
- BILE_ACID_METABOLISM+0.130
- HEDGEHOG_SIGNALING+0.100
- FATTY_ACID_METABOLISM+0.080
- DNA_REPAIR+0.050
- P53_PATHWAY+0.030
- APICAL_SURFACE-0.010
Top 10 suppressed
- ALLOGRAFT_REJECTION-0.510
- INFLAMMATORY_RESPONSE-0.490
- INTERFERON_GAMMA_RESPONSE-0.460
- IL6_JAK_STAT3_SIGNALING-0.440
- COMPLEMENT-0.380
- IL2_STAT5_SIGNALING-0.370
- ESTROGEN_RESPONSE_EARLY-0.270
- HYPOXIA-0.270
- KRAS_SIGNALING_UP-0.260
- TNFA_SIGNALING_VIA_NFKB-0.250
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | 8fba9293-e3f1-41ef-b79e-499a02826174 | — | — | 0.829 |
| 2 | MBCProject_0004_T1_RNA | — | C | 0.791 |
| 3 | d14f7871-db2f-423a-9e08-4ca84e452d61 | — | — | 0.790 |
| 4 | SRR8943016 | — | — | 0.775 |
| 5 | R230 | — | — | 0.771 |
| 6 | TCGA-ZF-A9RL-01A-11R-A38B-07 | — | — | 0.767 |
| 7 | SRR8518328 | — | C | 0.763 |
| 8 | SRR8613720 | — | C | 0.763 |
| 9 | 68fda9a5-c6eb-4445-91f7-bd0078080b9d | — | — | 0.762 |
| 10 | TCGA-S3-AA11-01A-31R-A41B-07 | — | B | 0.761 |