SRR5088885
—
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- —
- cancer_type_detailed
- —
- subtype
- —
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- TGF_BETA_SIGNALING+0.500
- G2M_CHECKPOINT+0.400
- E2F_TARGETS+0.300
- MITOTIC_SPINDLE+0.300
- MYOGENESIS+0.300
- EPITHELIAL_MESENCHYMAL_TRANSITION+0.200
- HEDGEHOG_SIGNALING+0.200
- PANCREAS_BETA_CELLS+0.200
- SPERMATOGENESIS+0.200
- UNFOLDED_PROTEIN_RESPONSE+0.200
Top 10 suppressed
- INTERFERON_ALPHA_RESPONSE-0.600
- ALLOGRAFT_REJECTION-0.500
- INTERFERON_GAMMA_RESPONSE-0.500
- OXIDATIVE_PHOSPHORYLATION-0.500
- CHOLESTEROL_HOMEOSTASIS-0.400
- FATTY_ACID_METABOLISM-0.400
- IL6_JAK_STAT3_SIGNALING-0.400
- REACTIVE_OXYGEN_SPECIES_PATHWAY-0.400
- ADIPOGENESIS-0.300
- APICAL_SURFACE-0.300
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | SRR5088886 | — | — | 0.951 |
| 2 | 0918cbd5-edd0-41c8-8b67-677f35ad4611 | — | — | 0.909 |
| 3 | b0be4742-ccb7-48e2-b756-0c384321114e | — | — | 0.866 |
| 4 | s0122214 | — | — | 0.863 |
| 5 | ERR2208889 | — | — | 0.830 |
| 6 | 20100144.Her2HRpos | — | D | 0.829 |
| 7 | TCGA-CV-7568-01A-11R-2232-07 | — | — | 0.823 |
| 8 | TCGA-GD-A3OS-01A-12R-A220-07 | — | — | 0.818 |
| 9 | SRR8518210 | — | E | 0.808 |
| 10 | TCGA-33-4533-01A-01R-1201-07 | — | cohortMD1 | 0.807 |