MDT-AP-3253
Med · Medulloblastoma
Clinical attributes
From the source cohort, normalized into canonical keys plus the project's native columns.
- cancer_type
- Med
- cancer_type_detailed
- —
- subtype
- Medulloblastoma
- cancer_type
- Med
- subtype
- Medulloblastoma
- age_years
- 13.5
- sex
- M
- new_clusters
- C3
- umap1_2d
- 3.452245477
- umap2_2d
- 6.585582831
- umap1_3d
- 3.234251933
- umap2_3d
- -1.863543381
- umap3_3d
- -4.250394252
- dataset
- Med-Taylor
GSVA pathway preview (50 Hallmark scores)
Top 10 most elevated and top 10 most suppressed Hallmark pathways for this sample.
Top 10 elevated
- PROTEIN_SECRETION+0.450
- HEME_METABOLISM+0.260
- NOTCH_SIGNALING+0.130
- TGF_BETA_SIGNALING+0.110
- PI3K_AKT_MTOR_SIGNALING+0.090
- ADIPOGENESIS+0.080
- APICAL_SURFACE+0.040
- OXIDATIVE_PHOSPHORYLATION+0.030
- UNFOLDED_PROTEIN_RESPONSE+0.000
- PEROXISOME-0.010
Top 10 suppressed
- E2F_TARGETS-0.540
- EPITHELIAL_MESENCHYMAL_TRANSITION-0.510
- G2M_CHECKPOINT-0.510
- ANGIOGENESIS-0.470
- ALLOGRAFT_REJECTION-0.410
- COAGULATION-0.340
- ESTROGEN_RESPONSE_LATE-0.310
- IL6_JAK_STAT3_SIGNALING-0.310
- INFLAMMATORY_RESPONSE-0.310
- HEDGEHOG_SIGNALING-0.300
Patient twins — nearest pathway neighbors
10 samples closest to this one in 50-dim pathway space, drawn from the Pathway Atlas. Cosine similarity = 1 means identical pathway state.
10 twins match this tumor's tissue · 0 come from a different tissue of origin
| # | Sample | Cancer type | Subtype | cos similarity |
|---|---|---|---|---|
| 1 | MDT-AP-3207 | Med | Medulloblastoma | 0.878 |
| 2 | MDT-AP-2991 | Med | Medulloblastoma | 0.876 |
| 3 | MDT-AP-0576 | Med | Medulloblastoma | 0.873 |
| 4 | MDT-AP-3296 | Med | Medulloblastoma | 0.871 |
| 5 | MDT-AP-0402 | Med | Medulloblastoma | 0.868 |
| 6 | TCGA-D8-A1JN-01A-11R-A13Q-07 | — | C | 0.856 |
| 7 | MDT-AP-1362 | Med | Medulloblastoma | 0.842 |
| 8 | SRR12475149 | — | — | 0.834 |
| 9 | MDT-AP-1354 | Med | Medulloblastoma | 0.833 |
| 10 | BS_Z7PKVY9J | Med | Medulloblastoma | 0.833 |